# Seqera — how to use (mcp.ai)

Connect your Seqera account and use 14 tools for developer tools straight from your AI agent. Connect with your own API key. Seqera Platform is an intuitive, centralized command post that enables data analysis at scale, allowing users to launch, manage, and monitor scalable Nextflow pipelines and compute environments on-premises or across cloud providers.

## Option A — via MCP (recommended)
Remote MCP endpoint (HTTP, streamable): `https://api.mcp.ai/p_seqera?ms=1787295720000`
Add it as a custom/remote MCP connector in your client (Claude, Cursor, VS Code…), then authenticate when prompted. Once connected, ask the agent to use the server's tools (e.g. `seqera_create_wave_container`).

## Option B — via direct REST API
Base URL: `https://api.mcp.ai/api/seqera`
Auth: `Authorization: Bearer sk_live_…` — create a workspace API key at https://mcp.ai/settings/api-keys
Discover endpoints: `GET https://api.mcp.ai/api/seqera/_endpoints`

### Endpoints
- `POST https://api.mcp.ai/api/seqera/create/wave/container` — Tool to submit a request to Wave for accessing a private container registry or building a container image on-the-fly. Use when you need to provision containers via Wave with Dockerfile, Conda recipe, 
  - body: { freeze?: boolean, packages?: object, condaFile?: string, nameStrategy?: string, containerFile?: string, containerImage?: string, buildRepository?: string, cacheRepository?: string, containerConfig?: object, towerAccessToken?: string, towerWorkspaceId?: integer, containerPlatform?: string }
- `POST https://api.mcp.ai/api/seqera/get/organization/details` — Tool to retrieve detailed information about a specific organization.
  - body: { organizationId: string }
- `POST https://api.mcp.ai/api/seqera/get/service/info` — Tool to retrieve information about the Seqera API service. Use when you need to check the service version and commit ID for troubleshooting.
- `POST https://api.mcp.ai/api/seqera/get/user/info` — Tool to retrieve information about the authenticated user. Use when you need to fetch details of the current user after authentication.
- `POST https://api.mcp.ai/api/seqera/get/wave/build/logs` — Tool to get logs for a container build by build ID. Use when you need to troubleshoot or inspect the build process of a Wave container.
  - body: { buildId: string }
- `POST https://api.mcp.ai/api/seqera/get/wave/build/status` — Tool to retrieve the status of a Wave container build by build ID. Use when you need to check if a container build is completed and whether it succeeded.
  - body: { buildId: string }
- `POST https://api.mcp.ai/api/seqera/inspect/wave/container` — Tool to inspect container image metadata via Wave. Use when you need registry, manifest, digest, configuration, and OCI compatibility information about a container image.
  - body: { towerEndpoint?: string, containerImage: string, towerAccessToken?: string, towerWorkspaceId?: string }
- `POST https://api.mcp.ai/api/seqera/list/action/event/types` — Tool to list supported action event types. Use when you need to discover available triggers for pipelines, optionally filtered by workspace.
  - body: { workspaceId?: string }
- `POST https://api.mcp.ai/api/seqera/list/compute/environments` — Tool to retrieve a list of compute environments. Use when you need to page, sort, or filter compute environments accessible to your account.
  - body: { status?: string, workspaceId?: integer }
- `POST https://api.mcp.ai/api/seqera/list/organizations` — Tool to list all organizations. Use after authentication to retrieve accessible Seqera organizations.
- `POST https://api.mcp.ai/api/seqera/list/pipelines` — Tool to list all pipelines accessible to the authenticated user. Use when you need to browse pipelines with optional pagination, sorting, or search filters.
  - body: { page?: integer, search?: string, sortBy?: string, pageSize?: integer, sortOrder?: string }
- `POST https://api.mcp.ai/api/seqera/list/workflows` — Tool to list workflows. Use when you need to retrieve workflows filtered by workspace and paginated.
  - body: { limit?: integer, nextToken?: string, workspaceId: string }
- `POST https://api.mcp.ai/api/seqera/validate/action/name` — Tool to validate action name. Use when you need to confirm if an action name is valid and available before creating an action. Returns validation status with details.
  - body: { name?: string, workspaceId?: integer }
- `POST https://api.mcp.ai/api/seqera/validate/pipeline/name` — Tool to validate a pipeline name. Use when you need to check if a given pipeline name is valid and available before creating or updating one.
  - body: { name?: string, orgId?: integer, workspaceId?: integer }

## Example prompts
- "What can I do in Seqera?"
- "Show me a summary of my Seqera account"

## More
- Page: https://mcp.ai/seqera
- Agent spec (llms.txt): https://mcp.ai/seqera/llms.txt
- Postman collection: https://mcp.ai/seqera/postman.json