# Seqera — MCP server on mcp.ai
> Connect your Seqera account and use 14 tools for developer tools straight from your AI agent. Connect with your own API key. Seqera Platform is an intuitive, centralized command post that enables data analysis at scale, allowing users to launch, manage, and monitor scalable Nextflow pipelines and compute environments on-premises or across cloud providers.

By: mcp.ai · official
Page: https://mcp.ai/seqera

## Connect (MCP protocol)
Remote MCP endpoint (HTTP, streamable): https://api.mcp.ai/p_seqera?ms=1787295900000
Add it as a custom/remote MCP connector, then authenticate when prompted.

## REST API (no MCP client required)
Every tool is also a REST endpoint, authed with a workspace API key.
Discover: GET https://api.mcp.ai/api/seqera/_endpoints   # public; lists every endpoint
Call:     POST https://api.mcp.ai/api/seqera/<endpoint>
  Authorization: Bearer sk_live_…   # create one at https://mcp.ai/settings/api-keys
  Content-Type: application/json
  Body: { …args }   →   { "ok": true, "tool": "<id>", "result": { … } }

## Developer docs
How to use (MCP or REST), markdown: https://mcp.ai/seqera/skill.md
Postman collection (v2.1): https://mcp.ai/seqera/postman.json

## Tools
- seqera_create_wave_container(freeze?: boolean, packages?: object, condaFile?: string, nameStrategy?: string, containerFile?: string, containerImage?: string, buildRepository?: string, cacheRepository?: string, containerConfig?: object, towerAccessToken?: string, towerWorkspaceId?: integer, containerPlatform?: string) — Tool to submit a request to Wave for accessing a private container registry or building a container image on-the-fly. Use when you need to provision containers via Wave with Dockerfile, Conda recipe, 
- seqera_get_organization_details(organizationId: string) — Tool to retrieve detailed information about a specific organization.
- seqera_get_service_info() — Tool to retrieve information about the Seqera API service. Use when you need to check the service version and commit ID for troubleshooting.
- seqera_get_user_info() — Tool to retrieve information about the authenticated user. Use when you need to fetch details of the current user after authentication.
- seqera_get_wave_build_logs(buildId: string) — Tool to get logs for a container build by build ID. Use when you need to troubleshoot or inspect the build process of a Wave container.
- seqera_get_wave_build_status(buildId: string) — Tool to retrieve the status of a Wave container build by build ID. Use when you need to check if a container build is completed and whether it succeeded.
- seqera_inspect_wave_container(towerEndpoint?: string, containerImage: string, towerAccessToken?: string, towerWorkspaceId?: string) — Tool to inspect container image metadata via Wave. Use when you need registry, manifest, digest, configuration, and OCI compatibility information about a container image.
- seqera_list_action_event_types(workspaceId?: string) — Tool to list supported action event types. Use when you need to discover available triggers for pipelines, optionally filtered by workspace.
- seqera_list_compute_environments(status?: string, workspaceId?: integer) — Tool to retrieve a list of compute environments. Use when you need to page, sort, or filter compute environments accessible to your account.
- seqera_list_organizations() — Tool to list all organizations. Use after authentication to retrieve accessible Seqera organizations.
- seqera_list_pipelines(page?: integer, search?: string, sortBy?: string, pageSize?: integer, sortOrder?: string) — Tool to list all pipelines accessible to the authenticated user. Use when you need to browse pipelines with optional pagination, sorting, or search filters.
- seqera_list_workflows(limit?: integer, nextToken?: string, workspaceId: string) — Tool to list workflows. Use when you need to retrieve workflows filtered by workspace and paginated.
- seqera_validate_action_name(name?: string, workspaceId?: integer) — Tool to validate action name. Use when you need to confirm if an action name is valid and available before creating an action. Returns validation status with details.
- seqera_validate_pipeline_name(name?: string, orgId?: integer, workspaceId?: integer) — Tool to validate a pipeline name. Use when you need to check if a given pipeline name is valid and available before creating or updating one.

## Example prompts
- "What can I do in Seqera?"
- "Show me a summary of my Seqera account"

## Links
Docs: https://mcp.ai/docs/mcps/seqera
Website: https://mcp.ai/mcps/seqera